Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis
Identifieur interne : 000920 ( Main/Exploration ); précédent : 000919; suivant : 000921Species limits in Diaporthe: molecular re-assessment of D. citri, D. cytosporella, D. foeniculina and D. rudis
Auteurs : D. Udayanga [États-Unis, Thaïlande] ; L. A. Castlebury [États-Unis] ; A. Y. Rossman [États-Unis] ; K. D. Hyde [Thaïlande]Source :
- Persoonia : Molecular Phylogeny and Evolution of Fungi [ 0031-5850 ] ; 2014.
Abstract
Species of
Url:
DOI: 10.3767/003158514X679984
PubMed: 25264384
PubMed Central: 4150081
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Species limits in <italic>Diaporthe</italic>: molecular re-assessment of <italic>D. citri</italic>, <italic>D. cytosporella</italic>, <italic>D. foeniculina</italic> and <italic>D. rudis</italic></title><author><name sortKey="Udayanga, D" sort="Udayanga, D" uniqKey="Udayanga D" first="D." last="Udayanga">D. Udayanga</name><affiliation wicri:level="1"><nlm:aff id="A1"><xref ref-type="author-notes" rid="fn1">*</xref>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, 20705 USA;</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Castlebury, L A" sort="Castlebury, L A" uniqKey="Castlebury L" first="L. A." last="Castlebury">L. A. Castlebury</name><affiliation wicri:level="1"><nlm:aff id="A1"><xref ref-type="author-notes" rid="fn1">*</xref>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, 20705 USA;</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Rossman, A Y" sort="Rossman, A Y" uniqKey="Rossman A" first="A. Y." last="Rossman">A. Y. Rossman</name><affiliation wicri:level="1"><nlm:aff id="A1"><xref ref-type="author-notes" rid="fn1">*</xref>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, 20705 USA;</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25264384</idno><idno type="pmc">4150081</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4150081</idno><idno type="RBID">PMC:4150081</idno><idno type="doi">10.3767/003158514X679984</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">001244</idno><idno type="wicri:Area/Pmc/Curation">001242</idno><idno type="wicri:Area/Pmc/Checkpoint">000704</idno><idno type="wicri:Area/Ncbi/Merge">001846</idno><idno type="wicri:Area/Ncbi/Curation">001846</idno><idno type="wicri:Area/Ncbi/Checkpoint">001846</idno><idno type="wicri:doubleKey">0031-5850:2014:Udayanga D:species:limits:in</idno><idno type="wicri:Area/Main/Merge">000920</idno><idno type="wicri:Area/Main/Curation">000920</idno><idno type="wicri:Area/Main/Exploration">000920</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Species limits in <italic>Diaporthe</italic>: molecular re-assessment of <italic>D. citri</italic>, <italic>D. cytosporella</italic>, <italic>D. foeniculina</italic> and <italic>D. rudis</italic></title><author><name sortKey="Udayanga, D" sort="Udayanga, D" uniqKey="Udayanga D" first="D." last="Udayanga">D. Udayanga</name><affiliation wicri:level="1"><nlm:aff id="A1"><xref ref-type="author-notes" rid="fn1">*</xref>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, 20705 USA;</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation></author><author><name sortKey="Castlebury, L A" sort="Castlebury, L A" uniqKey="Castlebury L" first="L. A." last="Castlebury">L. A. Castlebury</name><affiliation wicri:level="1"><nlm:aff id="A1"><xref ref-type="author-notes" rid="fn1">*</xref>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, 20705 USA;</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Rossman, A Y" sort="Rossman, A Y" uniqKey="Rossman A" first="A. Y." last="Rossman">A. Y. Rossman</name><affiliation wicri:level="1"><nlm:aff id="A1"><xref ref-type="author-notes" rid="fn1">*</xref>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD, 20705 USA;</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Systematic Mycology and Microbiology Laboratory, United States Department of Agriculture, Agricultural Research Service, Beltsville, MD</wicri:regionArea><wicri:noRegion>MD</wicri:noRegion></affiliation></author><author><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><affiliation wicri:level="1"><nlm:aff id="A2"> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> Institute of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="A3"> School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand.</nlm:aff><country xml:lang="fr" wicri:curation="lc">Thaïlande</country><wicri:regionArea> School of Science, Mae Fah Luang University, Chiang Rai 57100</wicri:regionArea><wicri:noRegion>Chiang Rai 57100</wicri:noRegion></affiliation></author></analytic><series><title level="j">Persoonia : Molecular Phylogeny and Evolution of Fungi</title><idno type="ISSN">0031-5850</idno><idno type="eISSN">1878-9080</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Species of <italic>Diaporthe</italic> are important plant pathogens of a wide range of hosts worldwide. In the present study the species causing melanose and stem end rot diseases of <italic>Citrus</italic> spp. are revised. Three species of <italic>Diaporthe</italic> occurring on <italic>Citrus</italic> are characterised, including <italic>D. citri</italic>, <italic>D. cytosporella</italic> and <italic>D. foeniculina.</italic> Morphology and phylogenetic analyses of the complete nuclear ribosomal internal transcribed spacer regions and partial sequences of actin, beta-tubulin, calmodulin and translation elongation factor 1-α were used to resolve species on <italic>Citrus</italic> and related <italic>Diaporthe</italic> species. <italic>Diaporthe citri</italic> occurs on <italic>Citrus</italic> throughout the <italic>Citrus</italic>-growing regions of the world. <italic>Diaporthe cytosporella</italic> is found on <italic>Citrus</italic> in Europe and California (USA). <italic>Diaporthe foeniculina</italic>, including the synonym <italic>D. neotheicola</italic>, is recognised as a species with an extensive host range including <italic>Citrus</italic>. <italic>Diaporthe medusaea</italic>, a name widely used for <italic>D. citri</italic>, was determined to be a synonym of <italic>D. rudis</italic>, a species with a broad host range. <italic>Diaporthe citri</italic> is delimited based on molecular phylogenetic analysis with the inclusion of the conserved ex-type and additional collections from different geographic locations worldwide. <italic>Diaporthe cytosporella</italic>, <italic>D. foeniculina</italic> and <italic>D. rudis</italic> are epitypified, fully described and illustrated with a review of all synonyms based on molecular data and morphological studies<italic>.</italic> Newly designed primers are introduced to optimise the amplification and sequencing of calmodulin and actin genes in <italic>Diaporthe</italic>. A discussion is provided of the utility of genes and the need for multi-gene phylogenies when distinguishing species of <italic>Diaporthe</italic> or describing new species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Agostini, Jp" uniqKey="Agostini J">JP Agostini</name></author><author><name sortKey="Bushong, Pm" uniqKey="Bushong P">PM Bushong</name></author><author><name sortKey="Bhatia, A" uniqKey="Bhatia A">A Bhatia</name></author><author><name sortKey="Timmer, Lw" uniqKey="Timmer L">LW Timmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arx, Ja Von" uniqKey="Arx J">JA von Arx</name></author><author><name sortKey="Muller, E" uniqKey="Muller E">E Müller</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bach, Wj" uniqKey="Bach W">WJ Bach</name></author><author><name sortKey="Wolf, Fa" uniqKey="Wolf F">FA 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sortKey="Garnsey, Ms" uniqKey="Garnsey M">MS Garnsey</name></author><author><name sortKey="Timmer, Lw" uniqKey="Timmer L">LW Timmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Winston, Jr" uniqKey="Winston J">JR Winston</name></author><author><name sortKey="Fluton, Hr" uniqKey="Fluton H">HR Fluton</name></author><author><name sortKey="Bowman, Jj" uniqKey="Bowman J">JJ Bowman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wolf, Fa" uniqKey="Wolf F">FA Wolf</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yamato, H" uniqKey="Yamato H">H Yamato</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Thaïlande</li><li>États-Unis</li></country></list><tree><country name="États-Unis"><noRegion><name sortKey="Udayanga, D" sort="Udayanga, D" uniqKey="Udayanga D" first="D." last="Udayanga">D. Udayanga</name></noRegion><name sortKey="Castlebury, L A" sort="Castlebury, L A" uniqKey="Castlebury L" first="L. A." last="Castlebury">L. A. Castlebury</name><name sortKey="Rossman, A Y" sort="Rossman, A Y" uniqKey="Rossman A" first="A. Y." last="Rossman">A. Y. Rossman</name></country><country name="Thaïlande"><noRegion><name sortKey="Udayanga, D" sort="Udayanga, D" uniqKey="Udayanga D" first="D." last="Udayanga">D. Udayanga</name></noRegion><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><name sortKey="Hyde, K D" sort="Hyde, K D" uniqKey="Hyde K" first="K. D." last="Hyde">K. D. Hyde</name><name sortKey="Udayanga, D" sort="Udayanga, D" uniqKey="Udayanga D" first="D." last="Udayanga">D. Udayanga</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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